Setup

FastQC Summary

Summary statistics for all libraries
Filename Total Flagged As Poor Quality Sequence Length %GC
313A_C85FPANXX_CGTACG_L004_R1.fastq 30,218,339 0 100-100 47
313A_C85FPANXX_CGTACG_L004_R2.fastq 30,218,339 0 100-100 47
313B_C85FPANXX_GAGTGG_L004_R1.fastq 30,326,837 0 100-100 47
313B_C85FPANXX_GAGTGG_L004_R2.fastq 30,326,837 0 100-100 47
313C_C85FPANXX_ACTGAT_L004_R1.fastq 29,619,454 0 100-100 47
313C_C85FPANXX_ACTGAT_L004_R2.fastq 29,619,454 0 100-100 47
352A_C85FPANXX_ATTCCT_L004_R1.fastq 29,050,764 0 100-100 47
352A_C85FPANXX_ATTCCT_L004_R2.fastq 29,050,764 0 100-100 47
352B_C85FPANXX_ATCACG_L004_R1.fastq 28,284,626 0 100-100 46
352B_C85FPANXX_ATCACG_L004_R2.fastq 28,284,626 0 100-100 46
352C_C85FPANXX_CGATGT_L004_R1.fastq 28,562,654 0 100-100 46
352C_C85FPANXX_CGATGT_L004_R2.fastq 28,562,654 0 100-100 47
58722A_R1_reads.fastq 22,805,613 0 100-100 46
58722A_R2_reads.fastq 22,805,613 0 100-100 46
58722B_R1_reads.fastq 25,517,712 0 100-100 46
58722B_R2_reads.fastq 25,517,712 0 100-100 46
58722C_R1_reads.fastq 26,805,482 0 100-100 46
58722C_R2_reads.fastq 26,805,482 0 100-100 46

Read Totals

Library Sizes ranged between 22,805,613 and 30,326,837 reads.

Read totals for each library. Duplicated reads are conventionally an high overestimate at this point.

FastQC Summary

Summary of FastQC flags for each parameter

Per Base Sequence Quality

Heatmap showing mean base qualities for each library

Per Sequence Quality Scores

Heatmap showing mean sequence qualities for each library

Per Base Sequence Content

Heatmap of summed base distributions along each read

Per Sequence GC Content

GC Content Heatmap normalised to theoretical GC content in the Hsapiens Transcriptome

GC Content Distributions for all reads showing theoretical GC content from the Hsapiens Transcriptome

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented Sequences

Summary of Overrepresented Sequences in all files. A maximum of 30 seqences are shown.
Filename Sequence Count Percentage Possible_Source
313A_C85FPANXX_CGTACG_L004_R2 AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT 49,841 0.1649 No Hit
313B_C85FPANXX_GAGTGG_L004_R2 AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT 60,368 0.1991 No Hit
313C_C85FPANXX_ACTGAT_L004_R2 AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT 43,543 0.147 No Hit
352A_C85FPANXX_ATTCCT_L004_R2 AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT 68,394 0.2354 No Hit
352B_C85FPANXX_ATCACG_L004_R2 AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT 53,130 0.1878 No Hit
352C_C85FPANXX_CGATGT_L004_R2 AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT 45,845 0.1605 No Hit
58722A_R2_reads AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT 37,068 0.1625 No Hit
58722B_R2_reads AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT 42,299 0.1658 No Hit
58722C_R2_reads AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT 42,358 0.158 No Hit
313B_C85FPANXX_GAGTGG_L004_R2 AAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTC 32,978 0.1087 No Hit
352A_C85FPANXX_ATTCCT_L004_R2 AAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTC 37,580 0.1294 No Hit
352B_C85FPANXX_ATCACG_L004_R2 AAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTC 29,528 0.1044 No Hit
58722A_R2_reads AATGGACCCTACTGCAGAAATATCAAAAAGAAGTGTCTACGTTTTGTGTG 26,470 0.1161 No Hit
58722B_R2_reads AATGGACCCTACTGCAGAAATATCAAAAAGAAGTGTCTACGTTTTGTGTG 28,655 0.1123 No Hit
58722C_R2_reads AATGGACCCTACTGCAGAAATATCAAAAAGAAGTGTCTACGTTTTGTGTG 29,696 0.1108 No Hit
313A_C85FPANXX_CGTACG_L004_R2 AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT 71,595 0.2369 No Hit
313B_C85FPANXX_GAGTGG_L004_R2 AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT 83,459 0.2752 No Hit
313C_C85FPANXX_ACTGAT_L004_R2 AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT 62,804 0.212 No Hit
352A_C85FPANXX_ATTCCT_L004_R2 AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT 91,883 0.3163 No Hit
352B_C85FPANXX_ATCACG_L004_R2 AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT 85,438 0.3021 No Hit
352C_C85FPANXX_CGATGT_L004_R2 AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT 72,604 0.2542 No Hit
58722A_R2_reads AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT 46,006 0.2017 No Hit
58722B_R2_reads AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT 52,288 0.2049 No Hit
58722C_R2_reads AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT 55,696 0.2078 No Hit
313A_C85FPANXX_CGTACG_L004_R2 ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC 41,628 0.1378 No Hit
313B_C85FPANXX_GAGTGG_L004_R2 ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC 52,760 0.174 No Hit
313C_C85FPANXX_ACTGAT_L004_R2 ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC 41,909 0.1415 No Hit
352A_C85FPANXX_ATTCCT_L004_R2 ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC 62,075 0.2137 No Hit
352B_C85FPANXX_ATCACG_L004_R2 ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC 58,531 0.2069 No Hit
352C_C85FPANXX_CGATGT_L004_R2 ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC 47,937 0.1678 No Hit

Adapter Content

Universal Adapter Content

Kmer Content

Summary of Overrepresented Kmers in all files. A maximum of 30 Kmers are shown.
Filename Sequence Count PValue Obs/Exp_Max Max_Obs/Exp_Position
352A_C85FPANXX_ATTCCT_L004_R2 ACTGACA 127,935 0 27.62 8
313B_C85FPANXX_GAGTGG_L004_R2 ACTGACA 124,640 0 28.42 8
352B_C85FPANXX_ATCACG_L004_R2 ACTGACA 123,770 0 32.49 8
58722B_R1_reads ATCCAGA 118,730 0 26.94 6
352A_C85FPANXX_ATTCCT_L004_R2 CACTGAC 123,810 0 28.53 7
352B_C85FPANXX_ATCACG_L004_R2 CACTGAC 119,590 0 33.59 7
313B_C85FPANXX_GAGTGG_L004_R2 CACTGAC 117,210 0 30.14 7
313A_C85FPANXX_CGTACG_L004_R1 CCAGAGA 124,550 0 26.46 8
313B_C85FPANXX_GAGTGG_L004_R1 CCAGAGA 119,595 0 27.48 8
352A_C85FPANXX_ATTCCT_L004_R2 CTGACAA 136,870 0 25.87 9
313B_C85FPANXX_GAGTGG_L004_R2 CTGACAA 134,505 0 26.41 9
352B_C85FPANXX_ATCACG_L004_R2 CTGACAA 132,095 0 30.5 9
58722C_R2_reads CTGACAA 122,535 0 26.45 9
352A_C85FPANXX_ATTCCT_L004_R2 GACAAAA 159,750 0 17.09 5
313B_C85FPANXX_GAGTGG_L004_R2 GACAAAA 155,150 0 16.79 5
58722C_R2_reads GACAAAA 135,910 0 17.61 5
313A_C85FPANXX_CGTACG_L004_R2 GACAAAA 131,155 0 16.84 5
58722B_R2_reads GACAAAA 130,155 0 16.65 5
352B_C85FPANXX_ATCACG_L004_R2 TACAACG 124,205 0 18.47 3
313A_C85FPANXX_CGTACG_L004_R1 TCCAGAG 126,145 0 26.19 7
313B_C85FPANXX_GAGTGG_L004_R1 TCCAGAG 124,415 0 26.47 7
352A_C85FPANXX_ATTCCT_L004_R2 TGACAAA 147,920 0 18.47 4
313B_C85FPANXX_GAGTGG_L004_R2 TGACAAA 146,040 0 17.78 4
352B_C85FPANXX_ATCACG_L004_R2 TGACAAA 143,445 0 18.46 10-11
58722C_R2_reads TGACAAA 128,635 0 18.55 4
352C_C85FPANXX_CGATGT_L004_R2 TGACAAA 124,815 0 18.08 10-11
313A_C85FPANXX_CGTACG_L004_R2 TGACAAA 124,645 0 17.73 4
58722B_R2_reads TGACAAA 122,585 0 17.61 4
58722C_R2_reads TGCGCGT 132,615 0 20.95 94
352B_C85FPANXX_ATCACG_L004_R2 TGCGCGT 122,490 0 26.9 94