| Filename | Total | Flagged As Poor Quality | Sequence Length | %GC |
|---|---|---|---|---|
| 313A_C85FPANXX_CGTACG_L004_R1.fastq | 30,218,339 | 0 | 100-100 | 47 |
| 313A_C85FPANXX_CGTACG_L004_R2.fastq | 30,218,339 | 0 | 100-100 | 47 |
| 313B_C85FPANXX_GAGTGG_L004_R1.fastq | 30,326,837 | 0 | 100-100 | 47 |
| 313B_C85FPANXX_GAGTGG_L004_R2.fastq | 30,326,837 | 0 | 100-100 | 47 |
| 313C_C85FPANXX_ACTGAT_L004_R1.fastq | 29,619,454 | 0 | 100-100 | 47 |
| 313C_C85FPANXX_ACTGAT_L004_R2.fastq | 29,619,454 | 0 | 100-100 | 47 |
| 352A_C85FPANXX_ATTCCT_L004_R1.fastq | 29,050,764 | 0 | 100-100 | 47 |
| 352A_C85FPANXX_ATTCCT_L004_R2.fastq | 29,050,764 | 0 | 100-100 | 47 |
| 352B_C85FPANXX_ATCACG_L004_R1.fastq | 28,284,626 | 0 | 100-100 | 46 |
| 352B_C85FPANXX_ATCACG_L004_R2.fastq | 28,284,626 | 0 | 100-100 | 46 |
| 352C_C85FPANXX_CGATGT_L004_R1.fastq | 28,562,654 | 0 | 100-100 | 46 |
| 352C_C85FPANXX_CGATGT_L004_R2.fastq | 28,562,654 | 0 | 100-100 | 47 |
| 58722A_R1_reads.fastq | 22,805,613 | 0 | 100-100 | 46 |
| 58722A_R2_reads.fastq | 22,805,613 | 0 | 100-100 | 46 |
| 58722B_R1_reads.fastq | 25,517,712 | 0 | 100-100 | 46 |
| 58722B_R2_reads.fastq | 25,517,712 | 0 | 100-100 | 46 |
| 58722C_R1_reads.fastq | 26,805,482 | 0 | 100-100 | 46 |
| 58722C_R2_reads.fastq | 26,805,482 | 0 | 100-100 | 46 |
Library Sizes ranged between 22,805,613 and 30,326,837 reads.
Read totals for each library. Duplicated reads are conventionally an high overestimate at this point.
Summary of FastQC flags for each parameter
Heatmap showing mean base qualities for each library
Heatmap showing mean sequence qualities for each library
Heatmap of summed base distributions along each read
GC Content Heatmap normalised to theoretical GC content in the Hsapiens Transcriptome
GC Content Distributions for all reads showing theoretical GC content from the Hsapiens Transcriptome
| Filename | Sequence | Count | Percentage | Possible_Source |
|---|---|---|---|---|
| 313A_C85FPANXX_CGTACG_L004_R2 | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 49,841 | 0.1649 | No Hit |
| 313B_C85FPANXX_GAGTGG_L004_R2 | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 60,368 | 0.1991 | No Hit |
| 313C_C85FPANXX_ACTGAT_L004_R2 | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 43,543 | 0.147 | No Hit |
| 352A_C85FPANXX_ATTCCT_L004_R2 | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 68,394 | 0.2354 | No Hit |
| 352B_C85FPANXX_ATCACG_L004_R2 | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 53,130 | 0.1878 | No Hit |
| 352C_C85FPANXX_CGATGT_L004_R2 | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 45,845 | 0.1605 | No Hit |
| 58722A_R2_reads | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 37,068 | 0.1625 | No Hit |
| 58722B_R2_reads | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 42,299 | 0.1658 | No Hit |
| 58722C_R2_reads | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 42,358 | 0.158 | No Hit |
| 313B_C85FPANXX_GAGTGG_L004_R2 | AAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTC | 32,978 | 0.1087 | No Hit |
| 352A_C85FPANXX_ATTCCT_L004_R2 | AAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTC | 37,580 | 0.1294 | No Hit |
| 352B_C85FPANXX_ATCACG_L004_R2 | AAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTC | 29,528 | 0.1044 | No Hit |
| 58722A_R2_reads | AATGGACCCTACTGCAGAAATATCAAAAAGAAGTGTCTACGTTTTGTGTG | 26,470 | 0.1161 | No Hit |
| 58722B_R2_reads | AATGGACCCTACTGCAGAAATATCAAAAAGAAGTGTCTACGTTTTGTGTG | 28,655 | 0.1123 | No Hit |
| 58722C_R2_reads | AATGGACCCTACTGCAGAAATATCAAAAAGAAGTGTCTACGTTTTGTGTG | 29,696 | 0.1108 | No Hit |
| 313A_C85FPANXX_CGTACG_L004_R2 | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 71,595 | 0.2369 | No Hit |
| 313B_C85FPANXX_GAGTGG_L004_R2 | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 83,459 | 0.2752 | No Hit |
| 313C_C85FPANXX_ACTGAT_L004_R2 | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 62,804 | 0.212 | No Hit |
| 352A_C85FPANXX_ATTCCT_L004_R2 | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 91,883 | 0.3163 | No Hit |
| 352B_C85FPANXX_ATCACG_L004_R2 | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 85,438 | 0.3021 | No Hit |
| 352C_C85FPANXX_CGATGT_L004_R2 | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 72,604 | 0.2542 | No Hit |
| 58722A_R2_reads | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 46,006 | 0.2017 | No Hit |
| 58722B_R2_reads | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 52,288 | 0.2049 | No Hit |
| 58722C_R2_reads | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 55,696 | 0.2078 | No Hit |
| 313A_C85FPANXX_CGTACG_L004_R2 | ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC | 41,628 | 0.1378 | No Hit |
| 313B_C85FPANXX_GAGTGG_L004_R2 | ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC | 52,760 | 0.174 | No Hit |
| 313C_C85FPANXX_ACTGAT_L004_R2 | ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC | 41,909 | 0.1415 | No Hit |
| 352A_C85FPANXX_ATTCCT_L004_R2 | ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC | 62,075 | 0.2137 | No Hit |
| 352B_C85FPANXX_ATCACG_L004_R2 | ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC | 58,531 | 0.2069 | No Hit |
| 352C_C85FPANXX_CGATGT_L004_R2 | ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC | 47,937 | 0.1678 | No Hit |
Universal Adapter Content
| Filename | Sequence | Count | PValue | Obs/Exp_Max | Max_Obs/Exp_Position |
|---|---|---|---|---|---|
| 352A_C85FPANXX_ATTCCT_L004_R2 | ACTGACA | 127,935 | 0 | 27.62 | 8 |
| 313B_C85FPANXX_GAGTGG_L004_R2 | ACTGACA | 124,640 | 0 | 28.42 | 8 |
| 352B_C85FPANXX_ATCACG_L004_R2 | ACTGACA | 123,770 | 0 | 32.49 | 8 |
| 58722B_R1_reads | ATCCAGA | 118,730 | 0 | 26.94 | 6 |
| 352A_C85FPANXX_ATTCCT_L004_R2 | CACTGAC | 123,810 | 0 | 28.53 | 7 |
| 352B_C85FPANXX_ATCACG_L004_R2 | CACTGAC | 119,590 | 0 | 33.59 | 7 |
| 313B_C85FPANXX_GAGTGG_L004_R2 | CACTGAC | 117,210 | 0 | 30.14 | 7 |
| 313A_C85FPANXX_CGTACG_L004_R1 | CCAGAGA | 124,550 | 0 | 26.46 | 8 |
| 313B_C85FPANXX_GAGTGG_L004_R1 | CCAGAGA | 119,595 | 0 | 27.48 | 8 |
| 352A_C85FPANXX_ATTCCT_L004_R2 | CTGACAA | 136,870 | 0 | 25.87 | 9 |
| 313B_C85FPANXX_GAGTGG_L004_R2 | CTGACAA | 134,505 | 0 | 26.41 | 9 |
| 352B_C85FPANXX_ATCACG_L004_R2 | CTGACAA | 132,095 | 0 | 30.5 | 9 |
| 58722C_R2_reads | CTGACAA | 122,535 | 0 | 26.45 | 9 |
| 352A_C85FPANXX_ATTCCT_L004_R2 | GACAAAA | 159,750 | 0 | 17.09 | 5 |
| 313B_C85FPANXX_GAGTGG_L004_R2 | GACAAAA | 155,150 | 0 | 16.79 | 5 |
| 58722C_R2_reads | GACAAAA | 135,910 | 0 | 17.61 | 5 |
| 313A_C85FPANXX_CGTACG_L004_R2 | GACAAAA | 131,155 | 0 | 16.84 | 5 |
| 58722B_R2_reads | GACAAAA | 130,155 | 0 | 16.65 | 5 |
| 352B_C85FPANXX_ATCACG_L004_R2 | TACAACG | 124,205 | 0 | 18.47 | 3 |
| 313A_C85FPANXX_CGTACG_L004_R1 | TCCAGAG | 126,145 | 0 | 26.19 | 7 |
| 313B_C85FPANXX_GAGTGG_L004_R1 | TCCAGAG | 124,415 | 0 | 26.47 | 7 |
| 352A_C85FPANXX_ATTCCT_L004_R2 | TGACAAA | 147,920 | 0 | 18.47 | 4 |
| 313B_C85FPANXX_GAGTGG_L004_R2 | TGACAAA | 146,040 | 0 | 17.78 | 4 |
| 352B_C85FPANXX_ATCACG_L004_R2 | TGACAAA | 143,445 | 0 | 18.46 | 10-11 |
| 58722C_R2_reads | TGACAAA | 128,635 | 0 | 18.55 | 4 |
| 352C_C85FPANXX_CGATGT_L004_R2 | TGACAAA | 124,815 | 0 | 18.08 | 10-11 |
| 313A_C85FPANXX_CGTACG_L004_R2 | TGACAAA | 124,645 | 0 | 17.73 | 4 |
| 58722B_R2_reads | TGACAAA | 122,585 | 0 | 17.61 | 4 |
| 58722C_R2_reads | TGCGCGT | 132,615 | 0 | 20.95 | 94 |
| 352B_C85FPANXX_ATCACG_L004_R2 | TGCGCGT | 122,490 | 0 | 26.9 | 94 |